11 December 2024
TITANIC Hotels Berlin
Europe/Berlin timezone

Archival of spatial-omics data: what BioImage Archive can offer

Not scheduled
5m
Seminar room Stuttgart (TITANIC Hotels Berlin)

Seminar room Stuttgart

TITANIC Hotels Berlin

Chausseestraße 30 10115 Berlin Germany
FLASH talk (metadata / sharing data & results / interoperability) Live challenges and flash talk

Description

Spatial-omics technologies generate complex multi-modal datasets presenting unique challenges for data archival and sharing. Often datasets are dispersed across multiple archives with information getting lost on the way, or not linked to each other. Standardised metadata frameworks, data formats and well-defined deposition strategies are essential to make the data FAIR. BioImage Archive has been working on enabling FAIR image data at scale, having implemented the REMBI metadata framework, converting images to interoperable cloud-compatible standardised data formats and including the annotation data e.g. segmentation masks and labels. In this talk I will give an overview of our collaborations and experience with the spatial-omics datasets and our work towards developing a spatial-omics gallery.

Primary authors

Aybuke Yoldas (EMBL-EBI) Dr Matthew Hartley (EMBL-EBI)

Presentation materials

There are no materials yet.